GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004004-TA|BGIBMGA004004-PA|undefined
         (204 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   2.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   8.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.2  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 152 LNINQATTASAVETPVYNPQPAEIVEK 178
           +   QA   S  E P+   Q A +VEK
Sbjct: 90  MKTTQAVVVSLYEDPIQPQQAASVVEK 116


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 144 STPLVQIILNINQATTASAVETPVYNP 170
           S+ +V+ +LN N+A    A  +P+ +P
Sbjct: 84  SSDIVRAVLNDNEADQLLAECSPISDP 110


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 129 PISVGPAIVDTPSAQSTPLVQIILNINQATT 159
           P   GP + D  SA +  L   +LN   AT+
Sbjct: 19  PFLGGPQLTDVCSASNGELFLALLNFFVATS 49


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,544
Number of Sequences: 429
Number of extensions: 2723
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 204
length of database: 140,377
effective HSP length: 55
effective length of query: 149
effective length of database: 116,782
effective search space: 17400518
effective search space used: 17400518
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)