GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003997-TA|BGIBMGA003997-PA|IPR004181|Zinc finger,
MIZ-type
         (619 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.60 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   5.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.6 bits (56), Expect = 0.60
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 500 EVLVDLTSDSEDELPLKRKVPQPKPTPPV 528
           E+ VD+ +DS+  L L +K P P P P V
Sbjct: 863 ELQVDI-ADSQQPLNLSKKSPSPSPRPLV 890


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 390 SLFLQMNERKPTWLCPVCDRAAPYDSLVVDG 420
           S FL       T     CD ++P+D +++ G
Sbjct: 237 SNFLSSTRTAETGTIRKCDESSPHDQVIIGG 267


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,638
Number of Sequences: 429
Number of extensions: 6104
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 619
length of database: 140,377
effective HSP length: 62
effective length of query: 557
effective length of database: 113,779
effective search space: 63374903
effective search space used: 63374903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)