GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003995-TA|BGIBMGA003995-PA|IPR009072|Histone-fold,
IPR009057|Homeodomain-like
         (683 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   1.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   1.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   6.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 179 HRSTVVPIQPPAGVLVDFEKPLEVPQKVPLPIDLVTDEP 217
           H+ T +  + P   +   E+P++V  ++  P D  T EP
Sbjct: 279 HKQTAIAFRTPTYRMQQVEQPVQVYIQLKRPSDGATSEP 317


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 179 HRSTVVPIQPPAGVLVDFEKPLEVPQKVPLPIDLVTDEP 217
           H+ T +  + P   +   E+P++V  ++  P D  T EP
Sbjct: 279 HKQTAIAFRTPTYRMQQVEQPVQVYIQLKRPSDGATSEP 317


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 110 VTHILKVRHYGDISNPITKFLKTGQVTPVAHRLLPFNPKMTLYEHSETEMPRIWIRHLAK 169
           V H LK +H     N      K  +  P   RL+  + K  +Y + + +  R W R    
Sbjct: 117 VPHELKEKHLTQRINSCDLLKKRNENDPFLKRLITGDEKWVVYNNIKRK--RSWSRPREP 174

Query: 170 KCKRFKFNWHRSTVV 184
                K   HR  V+
Sbjct: 175 AQTTSKAGIHRKKVL 189


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,681
Number of Sequences: 429
Number of extensions: 8142
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 3
length of query: 683
length of database: 140,377
effective HSP length: 62
effective length of query: 621
effective length of database: 113,779
effective search space: 70656759
effective search space used: 70656759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)