GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003993-TA|BGIBMGA003993-PA|undefined
         (171 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 113 KKSQDEKKIHPNRQSLVIKTLLMIKKNT 140
           KK Q+EK   P+R   + +    +KKNT
Sbjct: 264 KKMQEEKIFEPHRIPQLQEVSEFLKKNT 291


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 82  HVLIQFQLTQN-TTIEFLTFVQNWLTLLKITLKKSQDEKKIHPN 124
           ++L++   + N TT   LT V   +TL+ + L+ S  E+ I  N
Sbjct: 236 NILLRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIAN 279


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 61  HAIVTKNDTKLVAILTSQPWT 81
           H I+ +N TKL  ++    W+
Sbjct: 203 HCIIDENTTKLAIVVGEHDWS 223


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 71 LVAILTSQPWTHVLIQFQLTQNTTIEFL 98
          L+ +  +    H+L ++QL  +TT+ +L
Sbjct: 16 LLLLTNADNSVHILSKYQLITSTTLNWL 43


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 41  SRESKTQTSAGWKTLSTI 58
           S E K   S+GW+ L  I
Sbjct: 208 SNEKKIPKSSGWRKLRNI 225


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,677
Number of Sequences: 429
Number of extensions: 1563
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 171
length of database: 140,377
effective HSP length: 54
effective length of query: 117
effective length of database: 117,211
effective search space: 13713687
effective search space used: 13713687
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)