GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003989-TA|BGIBMGA003989-PA|IPR003767|Malate/L-lactate
dehydrogenase
         (329 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.39 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.39 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 210  SAVVDIFSGILSGSNYGHHIRSWSHTGSGGPANLGHCFVAVN-PGS 254
            SA+  + +G+   +NY   + +++  G G P  + +C    + PGS
Sbjct: 1171 SALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEEDVPGS 1216



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 270 WRQLEPTDPNLPVMAPGDKEKEAAKET 296
           W+Q E T P LP  A  D+ K A + T
Sbjct: 953 WQQQEFTGPPLPYAALIDELKPATRYT 979


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 210  SAVVDIFSGILSGSNYGHHIRSWSHTGSGGPANLGHCFVAVN-PGS 254
            SA+  + +G+   +NY   + +++  G G P  + +C    + PGS
Sbjct: 1167 SALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEEDVPGS 1212



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 270 WRQLEPTDPNLPVMAPGDKEKEAAKET 296
           W+Q E T P LP  A  D+ K A + T
Sbjct: 949 WQQQEFTGPPLPYAALIDELKPATRYT 975


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/25 (28%), Positives = 17/25 (68%)

Query: 219  ILSGSNYGHHIRSWSHTGSGGPANL 243
            +L GS Y  ++ +++  G+G P+++
Sbjct: 1427 LLCGSRYQIYVTAYNGIGTGDPSDM 1451


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query: 63  QPNNEPKILKENASTAWVDA 82
           +PN++ +++K+N  T + DA
Sbjct: 481 KPNDKSQVIKQNTWTVFRDA 500


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,764
Number of Sequences: 429
Number of extensions: 4121
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 329
length of database: 140,377
effective HSP length: 58
effective length of query: 271
effective length of database: 115,495
effective search space: 31299145
effective search space used: 31299145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)