GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003988-TA|BGIBMGA003988-PA|undefined
         (100 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   2.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   3.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            19   8.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 4   LSRRRFATVVTAQEKPRRKRNLNLHR 29
           L R  + T    +  PRRK  L LHR
Sbjct: 710 LDRLHYETDPCVRYYPRRKEWLYLHR 735


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 17  EKPRRKRNLNLH 28
           E PRRK N  LH
Sbjct: 339 EPPRRKNNCPLH 350


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 17 EKPRRKRNLN 26
          +K RRK+NLN
Sbjct: 7  KKKRRKKNLN 16


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.127    0.326 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,401
Number of Sequences: 429
Number of extensions: 511
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 140,377
effective HSP length: 49
effective length of query: 51
effective length of database: 119,356
effective search space:  6087156
effective search space used:  6087156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)
S2: 38 (19.4 bits)