GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003987-TA|BGIBMGA003987-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR
         (234 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.34 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 142 YGMAKAAVHQLTKSLGAKDSGLPENSLAVAIMPVTLDTEMNRKWM 186
           Y  +K A+  LT  L ++ +    N   ++I P  ++T+M  +W+
Sbjct: 161 YLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWL 205


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 26 FNYWVANIDLNPNEKADFNITVPKDASWVE 55
          FN +VA+I+    E  DF + +    SW+E
Sbjct: 15 FNIFVADINSINVEDMDFRVDMFVRQSWIE 44


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,507
Number of Sequences: 429
Number of extensions: 2210
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 234
length of database: 140,377
effective HSP length: 56
effective length of query: 178
effective length of database: 116,353
effective search space: 20710834
effective search space used: 20710834
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)