GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003986-TA|BGIBMGA003986-PA|IPR007007|Ninjurin
         (189 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 10  EDNVEHPKISEIAARDQNATSDIMKGLDAN 39
           E N  + KI+  + ++QNA  DI+  ++ N
Sbjct: 145 EKNAGNNKITMKSKKEQNAEEDIVDPVEEN 174



 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 4   DVEETSEDNVEHPKISEIAARDQNATSDIMK 34
           DV++  E NVE     E   +D ++ S I +
Sbjct: 527 DVKDVEEGNVEETNSEETHQKDGSSDSVIKR 557


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 4   DVEETSEDNVEHPKISEIAARDQNATSDIMK 34
           DV++  E NVE     E   +D ++ S I +
Sbjct: 293 DVKDVEEGNVEETNSEETHQKDGSSDSVIKR 323


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 4   DVEETSEDNVEHPKISEIAARDQNATSDIMK 34
           DV++  E NVE     E   +D ++ S I +
Sbjct: 208 DVKDVEEGNVEETNSEETHQKDGSSDSVIKR 238


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,907
Number of Sequences: 429
Number of extensions: 1337
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 189
length of database: 140,377
effective HSP length: 54
effective length of query: 135
effective length of database: 117,211
effective search space: 15823485
effective search space used: 15823485
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)