GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003985-TA|BGIBMGA003985-PA|IPR003960|AAA-protein
subdomain, IPR003593|AAA ATPase, IPR005938|AAA ATPase, CDC48,
IPR003338|AAA ATPase VAT, N-terminal, IPR003959|AAA ATPase, central
region, IPR009010|Aspartate decarboxylase-like fold
         (762 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   3.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   3.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   3.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   9.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   9.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   9.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 625 VDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEI 662
           V LS  A V  G S   LTE  QR   L  RQ++E ++
Sbjct: 188 VTLSASAMVL-GLSSYSLTEFQQRRAFLETRQSLEVQL 224


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 604 DEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIH 663
           +  S E   +     S I + V  SY+    Q   G D    C   CK+ +R  +E+E+ 
Sbjct: 304 ETNSEETHQKDGSSDSVIKRTVVSSYLQ--LQDLLG-DFEHPCVMDCKVGVRTYLESELA 360

Query: 664 RERSRXXXXXXXVMDMDEEDP 684
           + + R          M + DP
Sbjct: 361 KAKERPKLRKDMYEKMVQVDP 381


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 604 DEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIH 663
           +  S E   +     S I + V  SY+    Q   G D    C   CK+ +R  +E+E+ 
Sbjct: 219 ETNSEETHQKDGSSDSVIKRTVVSSYLQ--LQDLLG-DFEHPCVMDCKVGVRTYLESELA 275

Query: 664 RERSRXXXXXXXVMDMDEEDP 684
           + + R          M + DP
Sbjct: 276 KAKERPKLRKDMYEKMVQVDP 296


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 604 DEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIH 663
           +  S E   +     S I + V  SY+    Q   G D    C   CK+ +R  +E+E+ 
Sbjct: 538 ETNSEETHQKDGSSDSVIKRTVVSSYLQ--LQDLLG-DFEHPCVMDCKVGVRTYLESELA 594

Query: 664 RERSRXXXXXXXVMDMDEEDP 684
           + + R          M + DP
Sbjct: 595 KAKERPKLRKDMYEKMVQVDP 615


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 388 EDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIG 435
           +DD ID + +NSL +S   +   +T      ++E+ VEV  ++W   G
Sbjct: 223 DDDSIDFDRMNSLGLS---WLDQLTNLGFLGMKES-VEVDQLSWLGSG 266


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 388 EDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIG 435
           +DD ID + +NSL +S   +   +T      ++E+ VEV  ++W   G
Sbjct: 261 DDDSIDFDRMNSLGLS---WLDQLTNLGFLGMKES-VEVDQLSWLGSG 304


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 702 RSVSDNDIRKYEMF 715
           +S +D+DI KY+MF
Sbjct: 190 KSCTDSDIEKYKMF 203


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,959
Number of Sequences: 429
Number of extensions: 7902
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 762
length of database: 140,377
effective HSP length: 63
effective length of query: 699
effective length of database: 113,350
effective search space: 79231650
effective search space used: 79231650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)