GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003983-TA|BGIBMGA003983-PA|undefined
         (295 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 261 PTLFRLFTILSYVFQRALDVDSRLYNYFSQY 291
           PT    F  LS+ F  A  +   + +YF++Y
Sbjct: 273 PTALDFFVFLSFAFIFATIIQFAVVHYFTKY 303


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 152 PKSDGYKWAVTAIAWWSSYSIVFLLKWAL 180
           P   G  +A   ++ W++   + +L WAL
Sbjct: 95  PIFKGIGYATCVLSCWTNIYYIIILAWAL 123


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 152 PKSDGYKWAVTAIAWWSSYSIVFLLKWAL 180
           P   G  +A   ++ W++   + +L WAL
Sbjct: 148 PIFKGIGYATCVLSCWTNIYYIIILAWAL 176


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 17/67 (25%), Positives = 24/67 (35%)

Query: 142 YVLKPWKSSLPKSDGYKWAVTAIAWWSSYSIVFLLKWALNKVAGSDAEVLPKSCTALDVS 201
           +VL PW +        KW             +  L   L  + G  A+ LPK       +
Sbjct: 53  FVLDPWFAGSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTT 112

Query: 202 VLVFEEE 208
            L FEE+
Sbjct: 113 NLTFEED 119


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 6   TSSLKIEHHMPDAGIFRGLEIWVFVLGTLTSLYALVQW 43
           T + K+E+ +P     +  EIW F+  T+    A+V++
Sbjct: 276 TLASKVENSLPKVSYIKASEIW-FLGCTIFLFAAMVEF 312


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.137    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,668
Number of Sequences: 429
Number of extensions: 2908
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 295
length of database: 140,377
effective HSP length: 57
effective length of query: 238
effective length of database: 115,924
effective search space: 27589912
effective search space used: 27589912
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)