Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003975-TA|BGIBMGA003975-PA|undefined
(101 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456904-1|CAG33185.1| 106|Homo sapiens NDUFS5 protein. 50 2e-06
BC093057-1|AAH93057.1| 106|Homo sapiens NADH dehydrogenase (ubi... 50 2e-06
BC001884-1|AAH01884.1| 106|Homo sapiens NADH dehydrogenase (ubi... 50 2e-06
AL606465-3|CAI16711.1| 106|Homo sapiens NADH dehydrogenase (ubi... 50 2e-06
AF020352-1|AAB87866.1| 106|Homo sapiens NADH:ubiquinone oxidore... 50 2e-06
BC066553-1|AAH66553.1| 136|Homo sapiens C6orf114 protein protein. 28 4.0
AL583828-1|CAI14821.1| 136|Homo sapiens RP11-501I19.1 protein. 28 4.0
AF264036-1|AAK58533.1| 136|Homo sapiens ADG-90 protein. 28 4.0
BC127709-1|AAI27710.1| 166|Homo sapiens Unknown (protein for MG... 28 5.3
BC127708-1|AAI27709.1| 205|Homo sapiens low density lipoprotein... 28 5.3
AL353898-1|CAI22661.1| 205|Homo sapiens low density lipoprotein... 28 5.3
BC045552-1|AAH45552.1| 471|Homo sapiens FGD4 protein protein. 27 7.0
AY367054-1|AAQ72372.1| 280|Homo sapiens actin-filament binding ... 27 7.0
AK057294-1|BAB71413.1| 766|Homo sapiens protein ( Homo sapiens ... 27 7.0
>CR456904-1|CAG33185.1| 106|Homo sapiens NDUFS5 protein.
Length = 106
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 15 ITGGMIDFQILGRCGKQEMDLMNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQLKRFLAI 74
I G +++ GRC E + + C G R K+CK DD+ EC K ++R I
Sbjct: 20 IQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGTI 79
Query: 75 RKERQRQIACGKLT 88
RK+R + I GK T
Sbjct: 80 RKQRDKLIKEGKYT 93
>BC093057-1|AAH93057.1| 106|Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q
reductas protein.
Length = 106
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 15 ITGGMIDFQILGRCGKQEMDLMNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQLKRFLAI 74
I G +++ GRC E + + C G R K+CK DD+ EC K ++R I
Sbjct: 20 IQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGTI 79
Query: 75 RKERQRQIACGKLT 88
RK+R + I GK T
Sbjct: 80 RKQRDKLIKEGKYT 93
>BC001884-1|AAH01884.1| 106|Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q
reductas protein.
Length = 106
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 15 ITGGMIDFQILGRCGKQEMDLMNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQLKRFLAI 74
I G +++ GRC E + + C G R K+CK DD+ EC K ++R I
Sbjct: 20 IQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGTI 79
Query: 75 RKERQRQIACGKLT 88
RK+R + I GK T
Sbjct: 80 RKQRDKLIKEGKYT 93
>AL606465-3|CAI16711.1| 106|Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q
reductas protein.
Length = 106
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 15 ITGGMIDFQILGRCGKQEMDLMNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQLKRFLAI 74
I G +++ GRC E + + C G R K+CK DD+ EC K ++R I
Sbjct: 20 IQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGTI 79
Query: 75 RKERQRQIACGKLT 88
RK+R + I GK T
Sbjct: 80 RKQRDKLIKEGKYT 93
>AF020352-1|AAB87866.1| 106|Homo sapiens NADH:ubiquinone
oxidoreductase 15 kDa IP subunit protein.
Length = 106
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 15 ITGGMIDFQILGRCGKQEMDLMNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQLKRFLAI 74
I G +++ GRC E + + C G R K+CK DD+ EC K ++R I
Sbjct: 20 IQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGTI 79
Query: 75 RKERQRQIACGKLT 88
RK+R + I GK T
Sbjct: 80 RKQRDKLIKEGKYT 93
>BC066553-1|AAH66553.1| 136|Homo sapiens C6orf114 protein protein.
Length = 136
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 36 MNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQLKRFLAIRKERQRQIA 83
+ C+ Y G++K + +I YG C T L R + ER+ ++A
Sbjct: 76 LQCVRKYSQSWGVRKGQRHIR-YGMCSERTHHLSRTYSSLLEREEKLA 122
>AL583828-1|CAI14821.1| 136|Homo sapiens RP11-501I19.1 protein.
Length = 136
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 36 MNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQLKRFLAIRKERQRQIA 83
+ C+ Y G++K + +I YG C T L R + ER+ ++A
Sbjct: 76 LQCVRKYSQSWGVRKGQRHIR-YGMCSERTHHLSRTYSSLLEREEKLA 122
>AF264036-1|AAK58533.1| 136|Homo sapiens ADG-90 protein.
Length = 136
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 36 MNCIEAYGLGRGIKKCKGYIDDYGECRTLTKQLKRFLAIRKERQRQIA 83
+ C+ Y G++K + +I YG C T L R + ER+ ++A
Sbjct: 76 LQCVRKYSQSWGVRKGQRHIR-YGMCSERTHHLSRTYSSLLEREEKLA 122
>BC127709-1|AAI27710.1| 166|Homo sapiens Unknown (protein for
MGC:157804) protein.
Length = 166
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 17 GGMIDFQILGRCGKQEMDLMNCIEAYGLGRGIKKC-KGYIDDYGECRTLTKQLKRFL 72
G + R G D +CI A G+ G++ C G +D CR + + L FL
Sbjct: 29 GAQACITLTNRTGFLCHDQRSCIPASGVCDGVRTCTHGEDEDESLCRDVPQSLPHFL 85
>BC127708-1|AAI27709.1| 205|Homo sapiens low density lipoprotein
receptor class A domain containing 1 protein.
Length = 205
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 17 GGMIDFQILGRCGKQEMDLMNCIEAYGLGRGIKKC-KGYIDDYGECRTLTKQLKRFL 72
G + R G D +CI A G+ G++ C G +D CR + + L FL
Sbjct: 68 GAQACITLTNRTGFLCHDQRSCIPASGVCDGVRTCTHGEDEDESLCRDVPQSLPHFL 124
>AL353898-1|CAI22661.1| 205|Homo sapiens low density lipoprotein
receptor class A domain containing 1 protein.
Length = 205
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 17 GGMIDFQILGRCGKQEMDLMNCIEAYGLGRGIKKC-KGYIDDYGECRTLTKQLKRFL 72
G + R G D +CI A G+ G++ C G +D CR + + L FL
Sbjct: 68 GAQACITLTNRTGFLCHDQRSCIPASGVCDGVRTCTHGEDEDESLCRDVPQSLPHFL 124
>BC045552-1|AAH45552.1| 471|Homo sapiens FGD4 protein protein.
Length = 471
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 52 KGYIDDYGECRTLTKQLKRFLAIRKERQRQIACGKLTDDRKYVSP 96
KG+ + + +T+++ +F ++ +E Q+Q CG LT + P
Sbjct: 56 KGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGSLTLQHHMLEP 100
>AY367054-1|AAQ72372.1| 280|Homo sapiens actin-filament binding
protein frabin protein.
Length = 280
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 52 KGYIDDYGECRTLTKQLKRFLAIRKERQRQIACGKLTDDRKYVSP 96
KG+ + + +T+++ +F ++ +E Q+Q CG LT + P
Sbjct: 56 KGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGSLTLQHHMLEP 100
>AK057294-1|BAB71413.1| 766|Homo sapiens protein ( Homo sapiens
cDNA FLJ32732 fis, clone TESTI2001141, highly similar to
Rattus norvegicus actin-filament binding protein Frabin
mRNA. ).
Length = 766
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 52 KGYIDDYGECRTLTKQLKRFLAIRKERQRQIACGKLTDDRKYVSP 96
KG+ + + +T+++ +F ++ +E Q+Q CG LT + P
Sbjct: 304 KGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGSLTLQHHMLEP 348
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.326 0.144 0.445
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,396,399
Number of Sequences: 224733
Number of extensions: 475393
Number of successful extensions: 1091
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 14
length of query: 101
length of database: 73,234,838
effective HSP length: 78
effective length of query: 23
effective length of database: 55,705,664
effective search space: 1281230272
effective search space used: 1281230272
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)
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