GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003974-TA|BGIBMGA003974-PA|undefined
         (83 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   0.29 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   0.29 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   0.29 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   1.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.29
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 44  STLTKQLKRFLAIRHERQRQISQGKLTGDEKY 75
           S L +Q    LA  ++R RQ+++ K T +E Y
Sbjct: 542 SKLCQQCVGNLASNNDRIRQVTKCKATNEETY 573


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.29
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 44  STLTKQLKRFLAIRHERQRQISQGKLTGDEKY 75
           S L +Q    LA  ++R RQ+++ K T +E Y
Sbjct: 542 SKLCQQCVGNLASNNDRIRQVTKCKATNEETY 573


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.29
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 44  STLTKQLKRFLAIRHERQRQISQGKLTGDEKY 75
           S L +Q    LA  ++R RQ+++ K T +E Y
Sbjct: 542 SKLCQQCVGNLASNNDRIRQVTKCKATNEETY 573


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 40  YHECSTLTKQLKRFLAIRHERQRQISQGKLTGDEKYVSPRVD 81
           +H C  + K ++    I    +R+    ++  D KYV+  +D
Sbjct: 473 WHHCPEIYKAIEGIRFIADHTKREEDSTRVKEDWKYVAMVLD 514


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,078
Number of Sequences: 429
Number of extensions: 778
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 83
length of database: 140,377
effective HSP length: 47
effective length of query: 36
effective length of database: 120,214
effective search space:  4327704
effective search space used:  4327704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)