GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003970-TA|BGIBMGA003970-PA|IPR001781|LIM, zinc-binding,
IPR013998|Nebulin
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      30   0.008
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 29.9 bits (64), Expect = 0.008
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 37  CFKCAVCG----TKLTLKTYYNNQHWTEDKEVYCS 67
           C+ C VCG    TKLTLK +   QH+       C+
Sbjct: 371 CYTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCA 405


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 58  WTEDKEVYCSSHV 70
           WT+D++V CS+ +
Sbjct: 160 WTQDEDVICSTPI 172


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 5/13 (38%), Positives = 11/13 (84%)

Query: 58  WTEDKEVYCSSHV 70
           WT+D+++ CS+ +
Sbjct: 213 WTQDEDIICSTPI 225


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,133
Number of Sequences: 429
Number of extensions: 1857
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)