GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003965-TA|BGIBMGA003965-PA|IPR007110|Immunoglobulin-
like, IPR013106|Immunoglobulin V-set
         (159 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.068
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.068
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.12 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.9  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   7.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.068
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 77  ITAQLGGTAYLHCLVGHLSERGQVSWIRKRDWHILSSGKFTYTNDERFQVLHGEGSEDWT 136
           +T + G TA LHC V H      V+W++     +  S  +  T  +R     G  ++   
Sbjct: 817 VTVKKGDTATLHCEV-HGDTPVTVTWLKGGKIELNPSTNYRVTV-KREVTPDGVIAQ--- 871

Query: 137 LQIKFVQKRDNGTYECQ 153
           LQI   +  D+G Y CQ
Sbjct: 872 LQISSAEASDSGAYFCQ 888



 Score = 25.8 bits (54), Expect = 0.21
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 137  LQIKFVQKRDNGTYECQVEKA 157
            L +  +Q +D G Y CQVE A
Sbjct: 1369 LMLSNLQSQDGGDYTCQVENA 1389



 Score = 25.0 bits (52), Expect = 0.36
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 127 LHGEGSEDWTLQIKFVQKRDNGTYECQVEKA 157
           L G G +   L++  + + D G Y+C V ++
Sbjct: 374 LPGTGRQSELLRLNGINREDRGMYQCIVRRS 404


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.068
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 77  ITAQLGGTAYLHCLVGHLSERGQVSWIRKRDWHILSSGKFTYTNDERFQVLHGEGSEDWT 136
           +T + G TA LHC V H      V+W++     +  S  +  T  +R     G  ++   
Sbjct: 813 VTVKKGDTATLHCEV-HGDTPVTVTWLKGGKIELNPSTNYRVTV-KREVTPDGVIAQ--- 867

Query: 137 LQIKFVQKRDNGTYECQ 153
           LQI   +  D+G Y CQ
Sbjct: 868 LQISSAEASDSGAYFCQ 884



 Score = 25.8 bits (54), Expect = 0.21
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 137  LQIKFVQKRDNGTYECQVEKA 157
            L +  +Q +D G Y CQVE A
Sbjct: 1365 LMLSNLQSQDGGDYTCQVENA 1385



 Score = 25.0 bits (52), Expect = 0.36
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 127 LHGEGSEDWTLQIKFVQKRDNGTYECQVEKA 157
           L G G +   L++  + + D G Y+C V ++
Sbjct: 374 LPGTGRQSELLRLNGINREDRGMYQCIVRRS 404


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 131 GSEDWTLQIKFVQKRDNGTYECQV 154
           G E+  L+I+ V+K D G Y+C V
Sbjct: 349 GLEEAVLRIESVKKEDKGMYQCFV 372



 Score = 24.6 bits (51), Expect = 0.48
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 133 EDWTLQIKFVQKRDNGTYECQ 153
           ED TL I  +QK + G Y C+
Sbjct: 736 EDGTLSINNIQKTNEGYYLCE 756



 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 136  TLQIKFVQKRDNGTYECQVE 155
            +L IK V + D G Y C VE
Sbjct: 1330 SLFIKEVDRTDAGEYSCYVE 1349


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 60   AGTQQTVETAANNSVSNITAQLGG 83
            A TQQ  ++    +V  +TAQL G
Sbjct: 1179 ASTQQQQQSQQAQTVRMVTAQLAG 1202


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 82  GGTAYLHCLVGHLSERGQVSW 102
           G T  ++C +G L   G V W
Sbjct: 872 GETRTINCEIGGLQHPGAVVW 892


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 137 LQIKFVQKRDNGTYECQVE 155
           ++I    ++D G YECQ +
Sbjct: 85  MEIDPATQKDAGYYECQAD 103


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 32 AVFWMLPLITSSTGDIRHHGASRARG 57
          A+  +L L+T + G+I H+    A G
Sbjct: 4  AIVLLLALLTLAAGEIAHNDPHFAPG 29


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.132    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,856
Number of Sequences: 429
Number of extensions: 2034
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 159
length of database: 140,377
effective HSP length: 53
effective length of query: 106
effective length of database: 117,640
effective search space: 12469840
effective search space used: 12469840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)