GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003961-TA|BGIBMGA003961-PA|IPR001876|Zinc finger,
RanBP2-type, IPR007716|NPL4, zinc-binding putative, IPR007717|NPL4
         (638 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/14 (78%), Positives = 12/14 (85%)

Query: 91   SSTSSETHRKPLSE 104
            SS SSE HR+PLSE
Sbjct: 1319 SSGSSEDHRRPLSE 1332



 Score = 23.4 bits (48), Expect = 5.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 442 MRTLNAFYNIFINLDQWLVQSERD 465
           +RT NA YN   +L + L  S RD
Sbjct: 263 LRTFNASYNSLDSLPEGLFASTRD 286


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,072
Number of Sequences: 429
Number of extensions: 6369
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 638
length of database: 140,377
effective HSP length: 62
effective length of query: 576
effective length of database: 113,779
effective search space: 65536704
effective search space used: 65536704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)