GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003958-TA|BGIBMGA003958-PA|undefined
         (284 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    27   0.14 
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    27   0.14 
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    27   0.14 
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    27   0.14 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   1.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.1  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 226 SDELLTAIIVRGI-TDPQIRAMATNAKLSSDSIVEFLSSFVKPSNANNYNKRSVEASARF 284
           SD+  T I VR I   PQ   + T     +DS V  L + +  +  +  + RSVE+   F
Sbjct: 102 SDDYSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETSTQSSRSVESVEDF 161


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 226 SDELLTAIIVRGI-TDPQIRAMATNAKLSSDSIVEFLSSFVKPSNANNYNKRSVEASARF 284
           SD+  T I VR I   PQ   + T     +DS V  L + +  +  +  + RSVE+   F
Sbjct: 150 SDDYSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETSTQSSRSVESVEDF 209


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 226 SDELLTAIIVRGI-TDPQIRAMATNAKLSSDSIVEFLSSFVKPSNANNYNKRSVEASARF 284
           SD+  T I VR I   PQ   + T     +DS V  L + +  +  +  + RSVE+   F
Sbjct: 150 SDDYSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETSTQSSRSVESVEDF 209


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 226 SDELLTAIIVRGI-TDPQIRAMATNAKLSSDSIVEFLSSFVKPSNANNYNKRSVEASARF 284
           SD+  T I VR I   PQ   + T     +DS V  L + +  +  +  + RSVE+   F
Sbjct: 150 SDDYSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETSTQSSRSVESVEDF 209


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 240 DPQIRAMATNAKLSSDSIVEFLSSFVKPSNANNYNKR 276
           D + R  +   K+ S     ++S+    +N NNYNK+
Sbjct: 69  DKRERERSKERKIISSLSNNYISNISNYNNNNNYNKK 105


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 240 DPQIRAMATNAKLSSDSIVEFLSSFVKPSNANNYNKR 276
           D + R  +   K+ S     ++S+    +N NNYNK+
Sbjct: 69  DKRERERSKERKIISSLSNNYISNISNYNNDNNYNKK 105


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 240 DPQIRAMATNAKLSSDSIVEFLSSFVKPSNANNYNKR 276
           D   R  +   K+ S     ++S+    +N NNYNK+
Sbjct: 307 DKTERERSKERKIISSLSNNYISNISNYNNNNNYNKK 343


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,537
Number of Sequences: 429
Number of extensions: 2160
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 284
length of database: 140,377
effective HSP length: 57
effective length of query: 227
effective length of database: 115,924
effective search space: 26314748
effective search space used: 26314748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)