GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003953-TA|BGIBMGA003953-PA|IPR004210|BESS motif,
IPR006578|MADF
         (211 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.7  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   6.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 44  TLDKLIQVKWKNLKDVYVK 62
           +LD++  + W+N KD+ VK
Sbjct: 600 SLDQVWILNWRNQKDIDVK 618


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 124 NKHNHNEHYPSKRNTVTYYN 143
           N +N+N +Y +    + YYN
Sbjct: 93  NYNNYNNNYNTNYKKLQYYN 112


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 124 NKHNHNEHYPSKRNTVTYYN 143
           N +N+N +Y +    + YYN
Sbjct: 93  NYNNYNNNYNTNYKKLQYYN 112


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 124 NKHNHNEHYPSKRNTVTYYN 143
           N +N+N +Y +    + YYN
Sbjct: 93  NYNNYNNNYNTNYKKLQYYN 112


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 124 NKHNHNEHYPSKRNTVTYYN 143
           N +N+N +Y +    + YYN
Sbjct: 93  NYNNYNNNYNTNYKKLQYYN 112


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 124 NKHNHNEHYPSKRNTVTYYN 143
           N +N+N +Y +    + YYN
Sbjct: 93  NYNNYNNNYNTNYKKLQYYN 112


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 124 NKHNHNEHYPSKRNTVTYYN 143
           N +N+N +Y +    + YYN
Sbjct: 93  NYNNYNNNYNTNYKKLQYYN 112


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 124 NKHNHNEHYPSKRNTVTYYN 143
           N +N+N +Y +    + YYN
Sbjct: 97  NYNNYNNNYNTNYKKLQYYN 116


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 124 NKHNHNEHYPSKRNTVTYYN 143
           N +N+N +Y +    + YYN
Sbjct: 93  NYNNYNNNYNTNYKKLQYYN 112


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 126 HNHNEHYPSKRNTVTYYNETDSEYDMMF 153
           HN+N +  +  N   Y N   + Y  ++
Sbjct: 91  HNNNNYNNNNYNNYNYNNNNYNNYKKLY 118


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,857
Number of Sequences: 429
Number of extensions: 2631
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 10
length of query: 211
length of database: 140,377
effective HSP length: 55
effective length of query: 156
effective length of database: 116,782
effective search space: 18217992
effective search space used: 18217992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)