GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003948-TA|BGIBMGA003948-PA|undefined
         (495 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    31   0.029
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   1.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   1.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   3.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   3.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   3.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   7.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   7.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   7.7  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 30.7 bits (66), Expect = 0.029
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 112 KLNPNVEEFVP-RTMHDSKTCERQNISVIKKTDRDVTSKNDKSETNFTIANHNERNREVN 170
           KL+   E+F+  RT H   +  R+      K +R+     + S+  F      ER++E  
Sbjct: 254 KLHNEKEKFLEERTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRDRRERERSKESK 313

Query: 171 DSLSASNKIVKGTEN 185
              S SNK +    N
Sbjct: 314 IISSLSNKTIHNNNN 328


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 117 VEEFVPRTMHDSKTCERQNISVIKKTDRDVTSKNDKSETNFTIANHNERNREVNDSLSAS 176
           +EE   R  + S++ ER+  S   K +R+     ++S+         ER+RE     S S
Sbjct: 263 LEERTSRKRY-SRSREREQNSY--KNEREYRKYRERSKERSRDRTERERSREPKIISSLS 319

Query: 177 NKIVKGTEN 185
           NK +    N
Sbjct: 320 NKTIHNNNN 328


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 112 KLNPNVEEFVP-RTMHDSKTCERQNISVIKKTDRDVTSKNDKSETNFTIANHNERNREVN 170
           KL+   E+ +  RT     +C R+      K +       + S+         ER+RE  
Sbjct: 254 KLHNEKEKLLEERTSRKRYSCSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPK 313

Query: 171 DSLSASNKIVKGTEN 185
              S SNK +    N
Sbjct: 314 IISSLSNKTIHNNNN 328


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 117 VEEFVPRTMHDSKTCERQNISVIKKTDRDVTSKNDKSETNFTIANHNERNREVNDSLSAS 176
           +EE   R  + S++ ER+  S   K +R      ++S+         ER+RE     S S
Sbjct: 30  LEERTSRKRY-SRSREREQKSY--KNERKYRKYRERSKERSRDRTERERSREPKIISSLS 86

Query: 177 NKIVKGTEN 185
           NK +    N
Sbjct: 87  NKTIHNNNN 95


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 117 VEEFVPRTMHDSKTCERQNISVIKKTDRDVTSKNDKSETNFTIANHNERNREVNDSLSAS 176
           +EE   R  + S++ ER+  S   K +R      ++S+         ER+RE     S S
Sbjct: 30  LEERTSRKRY-SRSREREQKSY--KNERKYRKYRERSKERSRDRTERERSREPKIISSLS 86

Query: 177 NKIVKGTEN 185
           NK +    N
Sbjct: 87  NKTIHNNNN 95


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 288 PLLDIDTDIDNKNQVDDSICNRKKFAVPKDYEINLRKSPMNVINSEIEINSALPQRFD 345
           P    + D  N N +D    N K  A+    ++   K+ ++  N  +EIN  + Q  D
Sbjct: 365 PKFPRNIDEYNNNDLDTKKWNNKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNID 422


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 382 LNETDEKLIKTGLFLNP-VTFKRKDTSRRNSPVETEKKVAKQSNYCVTEQYKPSKYADEL 440
           ++E+ +K++  G  L+  V+     +S  +      KKV KQ++Y V E    S Y+  L
Sbjct: 904 MSESSKKVLSPGELLSSCVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFL 963


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 2/109 (1%)

Query: 114 NPNVEEFVPRTMHDSKT-CERQNISVIKKTDRDVTSKNDKSETNFTIANHNERNREVNDS 172
           NP++      ++ DS   C     S + +  RD   +N  +  N +    N    E   +
Sbjct: 337 NPSITRTGLSSVRDSSIICGGNKRSQVFR-GRDANRQNSCNIYNASSRMENNLRGETQSN 395

Query: 173 LSASNKIVKGTENKDIVMQASLDNAICTQAANELKKTILMSNAINPQMK 221
                K      N  +  +   +  +  Q  N+LKK+ ++ +  N ++K
Sbjct: 396 YREMEKRQSVPANDLLTTEKDNNEIVTAQFLNQLKKSSVLVHTKNGRLK 444


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 117 VEEFVPRTMHDSKTCERQNISVIKKTDRDVTSKNDKSETNFTIANHNERNREVNDSLSAS 176
           +EE   R  + S++ ER+  S   K +++     + S+         ER+RE     S S
Sbjct: 30  LEERTSRKRY-SRSREREQNSY--KNEKEYRKYRETSKERSRDRTERERSREPKIISSLS 86

Query: 177 NKIVKGTEN 185
           NK +    N
Sbjct: 87  NKTIHNNNN 95


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 408 RRNSPVETEKKVAKQSNYCVTEQYKPSKYADELMQMYTAR 447
           RRN  +E  K +  +   CVT      + +DE     T++
Sbjct: 243 RRNVLIERAKSIRARRTECVTNSVTCDRPSDEAEPSSTSK 282


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.127    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,792
Number of Sequences: 429
Number of extensions: 7193
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 10
length of query: 495
length of database: 140,377
effective HSP length: 60
effective length of query: 435
effective length of database: 114,637
effective search space: 49867095
effective search space used: 49867095
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)