GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003947-TA|BGIBMGA003947-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (780 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    25   2.4  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    25   2.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    25   2.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    25   3.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   7.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   7.2  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 444 WNDGNIRAFTPLTGRLMYCIYNTHNKGTSALDMTNDGRTLISGGCEGQVRVWDIRPESQT 503
           WN     A T  T +++     T N+ T+  D ++D  TLI      +VRV D+RP+++T
Sbjct: 70  WNKIPEGANTTSTTKIIDGHVVTINE-TTYTDGSDDYSTLI------RVRVIDVRPQNET 122

Query: 504 -LKKVLKEHKSPVSAIQ--VSPNNTEAVSA 530
            L  V  E  S V+ +   +  N T   S+
Sbjct: 123 ILTTVSSEADSDVTTLPTLIGKNETSTQSS 152


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 444 WNDGNIRAFTPLTGRLMYCIYNTHNKGTSALDMTNDGRTLISGGCEGQVRVWDIRPESQT 503
           WN     A T  T +++     T N+ T+  D ++D  TLI      +VRV D+RP+++T
Sbjct: 118 WNKIPEGANTTSTTKIIDGHVVTINE-TTYTDGSDDYSTLI------RVRVIDVRPQNET 170

Query: 504 -LKKVLKEHKSPVSAIQ--VSPNNTEAVSA 530
            L  V  E  S V+ +   +  N T   S+
Sbjct: 171 ILTTVSSEADSDVTTLPTLIGKNETSTQSS 200


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 444 WNDGNIRAFTPLTGRLMYCIYNTHNKGTSALDMTNDGRTLISGGCEGQVRVWDIRPESQT 503
           WN     A T  T +++     T N+ T+  D ++D  TLI      +VRV D+RP+++T
Sbjct: 118 WNKIPEGANTTSTTKIIDGHVVTINE-TTYTDGSDDYSTLI------RVRVIDVRPQNET 170

Query: 504 -LKKVLKEHKSPVSAIQ--VSPNNTEAVSA 530
            L  V  E  S V+ +   +  N T   S+
Sbjct: 171 ILTTVSSEADSDVTTLPTLIGKNETSTQSS 200


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)

Query: 471 TSALDMTNDGRTLISGGCEGQVRVWDIRPESQT-LKKVLKEHKSPVSAIQ--VSPNNTEA 527
           T+  D ++D  TLI      +VRV D+RP+++T L  V  E  S V+ +   +  N T  
Sbjct: 144 TTYTDGSDDYSTLI------RVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETST 197

Query: 528 VSA 530
            S+
Sbjct: 198 QSS 200


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 47  KTKKMYFLSGHSNSVSTV 64
           K +K+Y  SGH +++++V
Sbjct: 247 KKRKIYLFSGHESNIASV 264


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 47  KTKKMYFLSGHSNSVSTV 64
           K +K+Y  SGH +++++V
Sbjct: 262 KKRKIYLFSGHESNIASV 279


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,691
Number of Sequences: 429
Number of extensions: 9680
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 780
length of database: 140,377
effective HSP length: 63
effective length of query: 717
effective length of database: 113,350
effective search space: 81271950
effective search space used: 81271950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)