GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003941-TA|BGIBMGA003941-PA|IPR002347|Glucose/ribitol
dehydrogenase, IPR002198|Short-chain dehydrogenase/reductase SDR
         (253 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    53   3e-09

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 16/212 (7%)

Query: 1   MERELKDKIVVITGGACGIGFSIAEKYLQNQVAAVIILDTQQEKGEKSTKILNEKYGNKA 60
           ME+   D++ ++TG   GIG  + E  L  +   VI +  Q +K +   + L  K G K 
Sbjct: 1   MEQNWIDEVALVTGANSGIGKCLIE-CLVGKGMKVIGIAPQVDKMKTLVEELKSKPG-KL 58

Query: 61  IFKKCDVTTDLDLI-YCEIINA-YKYVDILINNAGIS-----ERDNP---RLTMNVNALA 110
           +  +CD++   D++   E +      +DILINNA I+     + D     +   ++N L 
Sbjct: 59  VPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLG 118

Query: 111 PIEWTLKFRKHMSKENGGKGGTILNMGSLFGIRSSYFG---PVYQASKHALNGFTKAIGH 167
                 +  K M K+ G   G I+N+    G+         P Y ASK AL   T  +  
Sbjct: 119 LTCMIQEVLKLMKKK-GINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRS 177

Query: 168 QFNFDNSGVRVIALCPGFTTTSLVKKYLDEDA 199
           +     S ++VI++ P    T +  ++L E++
Sbjct: 178 ELAQCESNIKVISISPDLVETDMTAQWLKENS 209


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,134
Number of Sequences: 429
Number of extensions: 3047
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 1
length of query: 253
length of database: 140,377
effective HSP length: 56
effective length of query: 197
effective length of database: 116,353
effective search space: 22921541
effective search space used: 22921541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)