GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003940-TA|BGIBMGA003940-PA|IPR002347|Glucose/ribitol
dehydrogenase, IPR002198|Short-chain dehydrogenase/reductase SDR
         (247 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    48   8e-08
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 48.0 bits (109), Expect = 8e-08
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 15/154 (9%)

Query: 55  KTVFVKCDL--KTDIDRAFNEIVEKYKRIDVLVNNAGVG---------GTDYKTCIDINF 103
           K V ++CDL  + DI +    + +    ID+L+NNA +            D+K   DIN 
Sbjct: 57  KLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINL 116

Query: 104 TACVTLSLKLYHYNMSRDERTESTIINISSIMGYRI---SQFSPIYQATKAGMITFTRSL 160
              +T  ++     M +       I+NI+   G  +   ++  P Y A+K  + T T  L
Sbjct: 117 LG-LTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCL 175

Query: 161 GHEENLQKSGVRVVALCPGFTKTNLTRPFFEEDT 194
             E    +S ++V+++ P   +T++T  + +E++
Sbjct: 176 RSELAQCESNIKVISISPDLVETDMTAQWLKENS 209


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 160 LGHEENLQKSGVRVVALCPGFTKTNLTRPFFEEDTSSI 197
           L H       G+ ++ LC    K ++   FFEE    +
Sbjct: 228 LSHSNASVAGGMEMILLCEKVAKEDIQVRFFEEKDGQV 265


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 160 LGHEENLQKSGVRVVALCPGFTKTNLTRPFFEEDTSSI 197
           L H       G+ ++ LC    K ++   FFEE    +
Sbjct: 228 LSHSNASVAGGMEMILLCEKVAKEDIQVRFFEEKDGQV 265


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 80  RIDVLVNNAGVGGT 93
           +ID LV  AG GGT
Sbjct: 206 KIDYLVAGAGTGGT 219


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,693
Number of Sequences: 429
Number of extensions: 2919
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 247
length of database: 140,377
effective HSP length: 56
effective length of query: 191
effective length of database: 116,353
effective search space: 22223423
effective search space used: 22223423
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)