GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003922-TA|BGIBMGA003922-PA|undefined
         (217 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.9  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 107 TDENIEQNARWTSLIIRPKSANANSVLTFGASYLMEYQLYKQAIAGSNANWCCIEQ 162
           T      + R+T+  I  +S    S +   A   +   LY  A++  N N+   EQ
Sbjct: 225 TSSTFASDPRYTTFTINGESFTLQSGIFGMALSPLTQNLYYSALSSHNLNYVNTEQ 280


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 98  GVQLIKSVPTDENIEQNARWTS 119
           G  +   +P D+N+E  A+W +
Sbjct: 328 GNPICVQIPWDKNVEALAKWAN 349


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 55  FDETIGGTRLNVHLLQRVS 73
           F E+ GG+ +++HL+  V+
Sbjct: 250 FGESAGGSSVSLHLISPVT 268


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 55  FDETIGGTRLNVHLLQRVS 73
           F E+ GG+ +++HL+  V+
Sbjct: 250 FGESAGGSSVSLHLISPVT 268


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,147
Number of Sequences: 429
Number of extensions: 2887
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 217
length of database: 140,377
effective HSP length: 55
effective length of query: 162
effective length of database: 116,782
effective search space: 18918684
effective search space used: 18918684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)