GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003909-TA|BGIBMGA003909-PA|IPR002624|Deoxynucleoside
kinase
         (226 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   7.1  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   9.3  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   9.3  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 146 LIVYLKTSPQVVWERVMRRGRAEESEVPLEYLQQVHDSYESWLNSEVGCEVLTIDAD 202
           + + L+    + W  +   G ++  E   + + ++ D Y+  L    G E L +  D
Sbjct: 10  IFILLQMIHLIAWASLENTGISDRLENVTQTISRILDGYDIRLRPNFGGEPLLVGMD 66


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 55  SGHNLLSLMYSDQKKWIFT--FQHYV 78
           SG  ++S     Q+ WIFT  FQ Y+
Sbjct: 360 SGMKIISSKKDRQELWIFTISFQKYM 385


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 174 LEYLQQVHDSYESWLNS 190
           L YLQ++H    +W++S
Sbjct: 327 LRYLQELHVDAPTWISS 343


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
          protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 40 NVEHHTEPLHEWR 52
          N+EH    +HEW+
Sbjct: 30 NLEHSMNVIHEWK 42


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 41  VEHHTEPLHEWRDVSGHNL 59
           V +HT   HEW  +S  N+
Sbjct: 121 VPNHTSDQHEWFQLSLKNI 139


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 41  VEHHTEPLHEWRDVSGHNL 59
           V +HT   HEW  +S  N+
Sbjct: 121 VPNHTSDQHEWFQLSLKNI 139


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 27 GKSTCIKFFNKFHNVEHHTEPLHEWRDV 54
          GK  C K   K H  + H E   E+R V
Sbjct: 12 GKVLCSKASLKRHVADKHAERQEEYRCV 39


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 137 EKCLDTSLDLIVYLKTSPQVVWERV 161
           EK   T+  ++ YLKT     WER+
Sbjct: 77  EKQKHTANKVVNYLKTKRPKDWERL 101


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 137 EKCLDTSLDLIVYLKTSPQVVWERV 161
           EK   T+  ++ YLKT     WER+
Sbjct: 77  EKQKHTANKVVNYLKTKRPKDWERL 101


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,462
Number of Sequences: 429
Number of extensions: 2920
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 226
length of database: 140,377
effective HSP length: 56
effective length of query: 170
effective length of database: 116,353
effective search space: 19780010
effective search space used: 19780010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)