GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003905-TA|BGIBMGA003905-PA|IPR007110|Immunoglobulin-like
         (133 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.069
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.069
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.21 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.28 

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.1 bits (57), Expect = 0.069
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 98  SAQLGEDMELNC--TTGPAMPPANIMWYIDGR 127
           S  LG + E  C  +T P   P  I WY DGR
Sbjct: 341 SVHLGGNAEFRCEVSTHPQAGPHFITWYKDGR 372


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.1 bits (57), Expect = 0.069
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 98  SAQLGEDMELNC--TTGPAMPPANIMWYIDGR 127
           S  LG + E  C  +T P   P  I WY DGR
Sbjct: 341 SVHLGGNAEFRCEVSTHPQAGPHFITWYKDGR 372



 Score = 25.8 bits (54), Expect = 0.16
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 60  FTCEVSTERPRFAVVKQTKNLTVAVTLKDDPLVVGVPSSAQLGEDMELNCTTGPAMPPAN 119
           +TC    ++   A  +++ ++ V V  K  P          LGE   L C+      P +
Sbjct: 587 YTCSARNKQGHSA--RRSGDVAVIVPPKISPFTAD--RDLHLGERTTLTCSVTRGDLPLS 642

Query: 120 IMWYIDGR 127
           I W  DGR
Sbjct: 643 ISWLKDGR 650


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 2   RYFDTVLDNSFTETTSLFQQPQTRTFNTTIAGVTRGSCNEH 42
           RY D +    +TET +   +  TR FNT +  V + +C E+
Sbjct: 222 RYGDAIPTVPYTETET---ETWTRVFNTLVDLVPKHACAEY 259


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 77  TKNLTVAVTLKDDPLVVGVPSSAQLGEDMELNCTTGPAMPPANIMWYIDG 126
           +K  +V+V   D  L V    SA++G+++E+ C      PP  ++W  +G
Sbjct: 301 SKLYSVSVVSLDKSLEVN-HISARVGDNVEIKCDV-TGTPPPPLVWRRNG 348



 Score = 23.0 bits (47), Expect = 1.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 102 GEDMELNCTTGPAMPPANIMWY 123
           GE   +NC  G    P  ++W+
Sbjct: 872 GETRTINCEIGGLQHPGAVVWF 893


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,860
Number of Sequences: 429
Number of extensions: 1432
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 133
length of database: 140,377
effective HSP length: 52
effective length of query: 81
effective length of database: 118,069
effective search space:  9563589
effective search space used:  9563589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)