GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003904-TA|BGIBMGA003904-PA|undefined
         (116 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   2.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   6.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   6.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   6.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 23   DSDSEADIIRLKECKERLNYMNMLNDYEFAYRFRLSKGAVNE 64
            D D+ A + + KE ++ +     LN+     + R+  G +N+
Sbjct: 999  DKDTNAVVTQSKEARDNITATKQLNN-----KARIGNGPINQ 1035


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 25  DSEADIIRLKECKERLNYMNMLNDYEFAYRFRLSKGAVNEWTNL 68
           ++ +++  L E  E  +Y ++ + YE A R     G    WT +
Sbjct: 213 ETYSNMCALCEKPEVCDYPDIYSGYEGALRCLAHNGGEIAWTKV 256


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 25  DSEADIIRLKECKERLNYMNMLNDYEFAYRFRLSKGAVNEWTNL 68
           ++ +++  L E  E  +Y ++ + YE A R     G    WT +
Sbjct: 213 ETYSNMCALCEKPEVCDYPDIYSGYEGALRCLAHNGGEIAWTKV 256


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 25  DSEADIIRLKECKERLNYMNMLNDYEFAYRFRLSKGAVNEWTNL 68
           ++ +++  L E  E  +Y ++ + YE A R     G    WT +
Sbjct: 213 ETYSNMCALCEKPEVCDYPDIYSGYEGALRCLAHNGGEIAWTKV 256


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,447
Number of Sequences: 429
Number of extensions: 1229
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 116
length of database: 140,377
effective HSP length: 50
effective length of query: 66
effective length of database: 118,927
effective search space:  7849182
effective search space used:  7849182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)