GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003902-TA|BGIBMGA003902-PA|undefined
         (245 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 102 ILDIVFKLFTEILKPGRFIVIDETM 126
           + D+V KL  E+ +PG  I+ + T+
Sbjct: 465 VSDVVTKLRYEVFQPGDIIIKEGTI 489


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 43  MVIGISKVPNLHLYWSKKRCYRNEYIANLITR 74
           M+I +  + NL       R ++NEY+  L  R
Sbjct: 354 MIISVKIIQNLAYSGRMNRIHKNEYMLALSNR 385


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 102 ILDIVFKLFTEILKPGRFIVIDETM 126
           + D+V KL  E+ +PG  I+ + T+
Sbjct: 433 VSDVVTKLRYEVFQPGDIIIKEGTI 457


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 77  FLLLLKFWHFSDNVNNGDKLYKIRKILDIVFKLFTEILKPGRFIV 121
           FL +L F+  SD+         I   L + F L  EI+ P   +V
Sbjct: 256 FLTVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVV 300


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 77  FLLLLKFWHFSDNVNNGDKLYKIRKILDIVFKLFTEILKPGRFIV 121
           FL +L F+  SD+         I   L + F L  EI+ P   +V
Sbjct: 260 FLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 304


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 77  FLLLLKFWHFSDNVNNGDKLYKIRKILDIVFKLFTEILKPGRFIV 121
           FL +L F+  SD+         I   L + F L  EI+ P   +V
Sbjct: 260 FLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 304


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,035
Number of Sequences: 429
Number of extensions: 3583
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 245
length of database: 140,377
effective HSP length: 56
effective length of query: 189
effective length of database: 116,353
effective search space: 21990717
effective search space used: 21990717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)