GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003875-TA|BGIBMGA003875-PA|undefined
         (65 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   0.69 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   0.69 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   4.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 0.69
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 20  GALPEVDSVLPAPKCVLPRAYIQVSILG 47
           G L  V + +P   C L +AY+  +I G
Sbjct: 645 GVLTLVATSMPTYICYLGKAYLMYAIAG 672


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 0.69
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 30 PAPKCVLPRAYIQVSILGWSK 50
          P  +C+  R +I+  +L W+K
Sbjct: 5  PYARCIQERRHIRRELLRWTK 25


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.0 bits (37), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 33  KCVLPRAYIQVSILGWS 49
           + V P A+I  +IL WS
Sbjct: 449 RIVFPVAFIIFNILYWS 465


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426
Number of Sequences: 429
Number of extensions: 590
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 65
length of database: 140,377
effective HSP length: 44
effective length of query: 21
effective length of database: 121,501
effective search space:  2551521
effective search space used:  2551521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)