GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003809-TA|BGIBMGA003809-PA|IPR000073|Alpha/beta
hydrolase fold-1
         (267 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.53 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.7  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
          protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 43 HRIVKFMKWDRFVYMAHSMGVVIGLFYNYVYPNKVSRM 80
          + ++K++ +DRF ++     V+   +Y Y Y N+   +
Sbjct: 4  NNVIKYINFDRFFFIEGMTNVLDFDYYFYDYSNRTQAL 41


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 37  HIIEVIHRIVKFMKWDRFV 55
           H ++++H  + FM+ D FV
Sbjct: 527 HEVDLVHNYMNFMQMDEFV 545


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 37  HIIEVIHRIVKFMKWDRFV 55
           H ++++H  + FM+ D FV
Sbjct: 153 HEVDLVHNYMNFMQMDEFV 171


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 160 KFELSWQPSMKKISNVSVSDETLYTSLTANSPP 192
           + EL  +    ++    +SD T  T+ T N+PP
Sbjct: 336 RLELQKRLPWLELQEKPISDSTSTTTETVNTPP 368


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 111 YDSFKRWNSSEKRRYTYDDALSLVVRNRNLSEEQAEVILARSLDPV-AGDKFELSWQPSM 169
           YD FK  +   +  + Y D L+       L  +  + I   +L PV   D   L + P M
Sbjct: 338 YDFFKDSSFRIQHHFFYPDPLASKYELHGLKFQWTDGIFGMALSPVDIHDDRTLFFHP-M 396

Query: 170 KKISNVSVSDETLYTSLTA 188
                 +VS   L    TA
Sbjct: 397 SSFREFAVSTSILGDKKTA 415


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 164 SWQPSMKKISNVSVSDETLYTSLTANSPPTLVIAASESSMVG 205
           S   S++  SN+ +    ++  + A   P LVI++    M+G
Sbjct: 83  STSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERMIG 124


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 164 SWQPSMKKISNVSVSDETLYTSLTANSPPTLVIAASESSMVG 205
           S   S++  SN+ +    ++  + A   P LVI++    M+G
Sbjct: 83  STSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERMIG 124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,650
Number of Sequences: 429
Number of extensions: 3807
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 267
length of database: 140,377
effective HSP length: 57
effective length of query: 210
effective length of database: 115,924
effective search space: 24344040
effective search space used: 24344040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)