GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003808-TA|BGIBMGA003808-PA|IPR000073|Alpha/beta
hydrolase fold-1
         (306 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.63 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 52  PDSFYYVAIDLPGNG 66
           P +FYY+   LPGNG
Sbjct: 410 PQNFYYIEEYLPGNG 424


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 65   NGRSDHLPPGVRYTVIDLVPA 85
            N  S+++ PG  + V+DLVPA
Sbjct: 1507 NQVSNNVKPGGNFVVLDLVPA 1527


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 207 LYRFTYDQRM---KEVTVLPFSGELLQKIYTPTT 237
           L ++  D+R+   +E  VL  SG+  +KI+ P T
Sbjct: 88  LNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDT 121


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 66  GRSDHLPPGVRYTVIDLVPAVIKVREHFKWDKFIYIGHSLGVPIGK 111
           G+ + +P  V   V     + +   +   W + IY G ++G P+ K
Sbjct: 607 GKKEGMPYNVLVVVSPFDDSNVVQIDSPVWGRHIYDGRAMGFPLDK 652


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 95  WDKFIYIGHSLGVPIG 110
           W K IY+    G+P+G
Sbjct: 253 WTKVIYVKRFFGLPVG 268


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 95  WDKFIYIGHSLGVPIG 110
           W K IY+    G+P+G
Sbjct: 253 WTKVIYVKRFFGLPVG 268


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 95  WDKFIYIGHSLGVPIG 110
           W K IY+    G+P+G
Sbjct: 253 WTKVIYVKRFFGLPVG 268


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 47  LVSLLPDSFYYVAIDLPGNGRSDHLPPG 74
           +VS L +  +Y+   L G+G+   LP G
Sbjct: 164 VVSWLQEPSFYIYPSLQGDGKFHLLPTG 191


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 47  LVSLLPDSFYYVAIDLPGNGRSDHLPPG 74
           +VS L +  +Y+   L G+G+   LP G
Sbjct: 164 VVSWLQEPSFYIYPSLQGDGKFHLLPTG 191


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.140    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,589
Number of Sequences: 429
Number of extensions: 4514
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 9
length of query: 306
length of database: 140,377
effective HSP length: 58
effective length of query: 248
effective length of database: 115,495
effective search space: 28642760
effective search space used: 28642760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)