GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003807-TA|BGIBMGA003807-PA|undefined
         (216 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.72 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 68  PGAVARRQVASQLEKELNELQTKWTLFVARSGLVQFPS 105
           PG  ARR+V + LE    E Q ++ + V R  ++  PS
Sbjct: 402 PGNDARRRVEAALEAVEEERQREYGIRVERDPILTPPS 439


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 45  ITACRKAEIQTLRRLRPLEHPTAPGAVARRQVASQLEKELNELQTK 90
           I   ++  I+ +++   +E    PG   R+   +Q+ + LN+ + K
Sbjct: 167 IKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDK 212


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 91  WTLFVARSGLVQFPSEPGKYARALQIHREKQRETKQRLEKSV 132
           W L +   GL +   +PG  A +  +    QR        S+
Sbjct: 7   WLLSICLFGLQEIAIQPGSNALSRNVEASGQRSVSSGFRSSL 48


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 6   SEEAPLKVAPGVAAGEVNEALQHQLKVLSWTVERERAA 43
           S+ A  +  PG+   +  +A QHQ  V S   ++++AA
Sbjct: 210 SQAASQQSQPGMHPRQQQQAQQHQGVVTSPLSQQQQAA 247


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 189 GPWSPAARFNSAEVYELDQPLS 210
           GP +P  RF S   Y    PL+
Sbjct: 153 GPSTPFPRFISPNAYRFRPPLN 174


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,896
Number of Sequences: 429
Number of extensions: 2171
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 216
length of database: 140,377
effective HSP length: 55
effective length of query: 161
effective length of database: 116,782
effective search space: 18801902
effective search space used: 18801902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)