GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003803-TA|BGIBMGA003803-PA|IPR007527|Zinc finger,
SWIM-type
         (602 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              24   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   3.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   3.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   3.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   9.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 209 LNQKYDFVVRKLQLNYGIEFNSPIPTTGNGNTASVKNNVTL 249
           +++    V+  L +NY    N+ +PT G G    VK N+ +
Sbjct: 33  VSRNITMVLENLLMNYE---NNQLPTHGKGTPTVVKTNILI 70


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 127 EETGNFVQNNTEVSTQQVTEQPNTFQQFEISNVTSNSNV 165
           +E GNF + NT    Q V +   T Q     +  S++NV
Sbjct: 74  DENGNFNEKNTRDIVQAVLDDNETDQLIVECSPISDANV 112


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 373 NNAINARLWDTLSRPSGALSKLDTW 397
           N+  NA+  D + R SGA  K+  W
Sbjct: 364 NHLKNAKYLDVIERNSGATDKIIRW 388


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 373 NNAINARLWDTLSRPSGALSKLDTW 397
           N+  NA+  D + R SGA  K+  W
Sbjct: 364 NHLKNAKYLDVIERNSGATDKIIRW 388


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 373 NNAINARLWDTLSRPSGALSKLDTW 397
           N+  NA+  D + R SGA  K+  W
Sbjct: 364 NHLKNAKYLDVIERNSGATDKIIRW 388


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 133 VQNNTEVSTQQVTEQPNTFQQFEISN--VTSNSNVEQQEYEVAIIENP 178
           V NNTE  T Q+  + +   +  + N  +T+N  VEQ+  +  +  NP
Sbjct: 52  VMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLKWNP 99


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,723
Number of Sequences: 429
Number of extensions: 5913
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 602
length of database: 140,377
effective HSP length: 62
effective length of query: 540
effective length of database: 113,779
effective search space: 61440660
effective search space used: 61440660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)