GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003799-TA|BGIBMGA003799-PA|undefined
         (217 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   0.96 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   0.96 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 153 EMGEKNNKGKWEPKKLQGATERQPVIDLAI 182
           EMG+ + K  W   KL+   ER   ID+A+
Sbjct: 48  EMGKGSFKYAWVLDKLKAERERGITIDIAL 77


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 153 EMGEKNNKGKWEPKKLQGATERQPVIDLAI 182
           EMG+ + K  W   KL+   ER   ID+A+
Sbjct: 48  EMGKGSFKYAWVLDKLKAERERGITIDIAL 77


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 93  QLIAVTPAPRREKPL-SAGPSYCFDKYYREQFKRC 126
           ++I    A +R K   +AG +Y FD  Y E  ++C
Sbjct: 528 EVITNEEAEKRGKEYDAAGRTYLFDLDYNESEEQC 562


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 148 EYTEIEMGEKNNKGKWEPKKLQGATE 173
           E   ++ G  N   +WEP +    TE
Sbjct: 559 ESISVDSGSINTVAEWEPPRALWPTE 584


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,116
Number of Sequences: 429
Number of extensions: 3270
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 217
length of database: 140,377
effective HSP length: 55
effective length of query: 162
effective length of database: 116,782
effective search space: 18918684
effective search space used: 18918684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)