GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003797-TA|BGIBMGA003797-PA|IPR007110|Immunoglobulin-
like, IPR013151|Immunoglobulin, IPR008957|Fibronectin, type III-like
fold
         (175 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.044
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.95 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.95 

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.3 bits (60), Expect = 0.044
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 9/124 (7%)

Query: 26  IVCEVDADPPAAVFKWKFNNSGETLDVAADRYTSNGSAS----SLKYTPVADLDYGTLSC 81
           + C+ D  P   V  WK   +G+T     D   SN   S    +L    +   + G   C
Sbjct: 698 VECKADGFPKPQV-TWK-KAAGDTPGDYTDLKLSNPDISVEDGTLSINNIQKTNEGYYLC 755

Query: 82  SASNEVGAQLAPCVFQMVVAV--VAATVRDNTYVRTSKVEMVCAGKPHAPRNCTLWNQTA 139
            A N +GA L+  +F  V A       +++ T  R     + C  +   P    LWN   
Sbjct: 756 EAVNGIGAGLSAVIFISVQAPPHFEIKLKNQTARRGEPAVLQCEAQGEKPIG-ILWNMNN 814

Query: 140 ESVE 143
           + ++
Sbjct: 815 KRLD 818


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 28  CEVDADP-PAAVFKWKFNN-SGETLDVAADRYTSNGSASSLKYTPVADLDYGTLSCSASN 85
           C+    P P  V+K    + SGE  ++    YT   S  +L    V +   G   C ASN
Sbjct: 731 CQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHVKEDREGFYLCQASN 790

Query: 86  EVGAQLAPCV 95
            +G+ +   V
Sbjct: 791 GIGSGIGKVV 800


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 28  CEVDADP-PAAVFKWKFNN-SGETLDVAADRYTSNGSASSLKYTPVADLDYGTLSCSASN 85
           C+    P P  V+K    + SGE  ++    YT   S  +L    V +   G   C ASN
Sbjct: 727 CQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHVKEDREGFYLCQASN 786

Query: 86  EVGAQLAPCV 95
            +G+ +   V
Sbjct: 787 GIGSGIGKVV 796


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.130    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,129
Number of Sequences: 429
Number of extensions: 1500
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 140,377
effective HSP length: 54
effective length of query: 121
effective length of database: 117,211
effective search space: 14182531
effective search space used: 14182531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)