GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003796-TA|BGIBMGA003796-PA|IPR007110|Immunoglobulin-like
         (88 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.11 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.14 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   1.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   3.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   5.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   5.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   5.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   6.9  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    19   6.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   9.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   9.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.11
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 27  NISEMYLANANVDPPVVRLRLGSSLAAGDI--KEGDDVYFECHVRANPP 73
           N++E Y+A + +    V + L  SL    I  + GD+V  +C V   PP
Sbjct: 292 NVNEFYMAFSKLYSVSV-VSLDKSLEVNHISARVGDNVEIKCDVTGTPP 339



 Score = 19.4 bits (38), Expect = 6.9
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 10  SLDNIGVPRHLCAPVYGNISEMYLANANVDPPVVRLRLGSSL 51
           SLD      H+ A V  N+           PP+V  R G+ L
Sbjct: 310 SLDKSLEVNHISARVGDNVEIKCDVTGTPPPPLVWRRNGADL 351


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.14
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 59  GDDVYFECHVRANPPARKLSWLHD 82
           G    F C+VR N P + +SWL D
Sbjct: 322 GRPATFTCNVRGN-PIKTVSWLKD 344



 Score = 20.2 bits (40), Expect = 4.0
 Identities = 7/18 (38%), Positives = 7/18 (38%)

Query: 55 DIKEGDDVYFECHVRANP 72
          D   G     EC  R NP
Sbjct: 14 DFSNGTGAVVECQARGNP 31


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 56  IKEGDDVYFECHVRANPPARKLSWLHD 82
           + EG      C V A  P   +SWL D
Sbjct: 622 LSEGMRTRTVCGVAAGDPPLTISWLKD 648



 Score = 21.4 bits (43), Expect = 1.7
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 56  IKEGDDVYFECHVRANPPARKLSWL 80
           +K+GD     C V  + P   ++WL
Sbjct: 819 VKKGDTATLHCEVHGDTPV-TVTWL 842


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 56  IKEGDDVYFECHVRANPPARKLSWL 80
           +K+GD     C V  + P   ++WL
Sbjct: 815 VKKGDTATLHCEVHGDTPV-TVTWL 838



 Score = 19.4 bits (38), Expect = 6.9
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 42  VVRLRLGSSLAAGDIKEGDDVYFECHVRANPPARKLSWLHD 82
           +V  ++    A  D+  G+     C V        +SWL D
Sbjct: 608 IVPPKISPFTADRDLHLGERTTLTCSVTRGDLPLSISWLKD 648


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 7   LFYSLDNIGVPRHLCAPVYGNISEMYLANANVDPP 41
           +FY   + G    LC+ +  +++  +L  A + PP
Sbjct: 270 VFYLPSDSGEKVSLCSSILLSLTVFFLLLAEIIPP 304


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 11  LDNIGVPRHLCAPVYGNIS 29
           LD    P+H+    Y N+S
Sbjct: 274 LDEFPQPKHMLIEAYTNLS 292


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 16  VPRHLCAPVYGNISEM 31
           VP+H CA    N  +M
Sbjct: 251 VPKHACAEYRRNFKKM 266


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 11  LDNIGVPRHLCAPVYGNIS 29
           LD    P+H+    Y N+S
Sbjct: 274 LDEFPQPKHMLIEAYTNLS 292


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 71  NPPARKLSWLHDVSILKE 88
           NP  R L  + +V++L+E
Sbjct: 343 NPEVRGLKSIQEVTLLRE 360


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 5/10 (50%), Positives = 7/10 (70%)

Query: 63  YFECHVRANP 72
           Y +CH + NP
Sbjct: 128 YVQCHYKQNP 137


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 71  NPPARKLSWLHDVSILKE 88
           NP  R L  + +V++L+E
Sbjct: 343 NPEVRGLKSIQEVTLLRE 360


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)

Query: 41  PVVRLRLGSSL 51
           P++R +LGS+L
Sbjct: 560 PIIRRKLGSAL 570


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 40 PPVVRLRLGSSLAAGDIKEGDDVYFECH 67
          P +V L    +LAAG+I   D  +   H
Sbjct: 3  PAIVLLLALLTLAAGEIAHNDPHFAPGH 30


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,653
Number of Sequences: 429
Number of extensions: 1063
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 88
length of database: 140,377
effective HSP length: 48
effective length of query: 40
effective length of database: 119,785
effective search space:  4791400
effective search space used:  4791400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)