GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003794-TA|BGIBMGA003794-PA|undefined
         (65 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.23 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.23 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   0.69 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            18   8.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 0.23
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 35  AQFPCDLGTAANDKVYMVFWFRDDAGIP 62
           A+F C++ T      + + W++D   +P
Sbjct: 348 AEFRCEVSTHPQAGPHFITWYKDGRQLP 375


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 0.23
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 35  AQFPCDLGTAANDKVYMVFWFRDDAGIP 62
           A+F C++ T      + + W++D   +P
Sbjct: 348 AEFRCEVSTHPQAGPHFITWYKDGRQLP 375


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 0.69
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 9   AAPSRFRYLTRAGVRTVDVQ 28
           A+P+   Y TRA ++T  +Q
Sbjct: 126 ASPTSIPYATRAEIKTESIQ 145


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 12  SRFRYLTRAGVRTVDVQAV 30
           S   +LTRA +RT+ +  +
Sbjct: 246 SSIGFLTRAKIRTLKMTVI 264


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)

Query: 11 PSRFRYLTRAGVR 23
          P  ++++TR+G R
Sbjct: 82 PISYKWITRSGTR 94


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.143    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478
Number of Sequences: 429
Number of extensions: 495
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 65
length of database: 140,377
effective HSP length: 44
effective length of query: 21
effective length of database: 121,501
effective search space:  2551521
effective search space used:  2551521
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)