GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003793-TA|BGIBMGA003793-PA|undefined
         (72 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   3.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   4.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    19   4.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   7.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    19   7.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 7    SEQMVYDRGAWKEKTCCADPMCPGEGQ 33
            S+    +R AW+++     P  P  GQ
Sbjct: 1340 SDYSTLERTAWRQQQPPPPPPPPSSGQ 1366


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 33  QKNDDNYPLLPWATESYNPARLLMKIRGGS 62
           Q +DD++  L   T  Y+P    + + G S
Sbjct: 220 QNSDDSFHRLTSNTFDYDPRYTKLTVAGES 249


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 33  QKNDDNYPLLPWATESYNPARLLMKIRGGS 62
           Q  DD++  L   T  Y+P    M I G S
Sbjct: 215 QNADDSFHRLTSNTFDYDPRYAKMTIDGES 244


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 5   GVSEQMVYDRGA 16
           GV+E + Y+RG+
Sbjct: 390 GVNESVSYERGS 401


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 33  QKNDDNYPLLPWATESYNPARLLMKIRGGSQKNASFANPM 72
           +KN + Y  +      +NPA++ ++       N      M
Sbjct: 167 EKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQM 206


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 4/14 (28%), Positives = 11/14 (78%)

Query: 38  NYPLLPWATESYNP 51
           +YP +P+  ++++P
Sbjct: 141 DYPQVPYTVKNFHP 154


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,946
Number of Sequences: 429
Number of extensions: 741
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 140,377
effective HSP length: 46
effective length of query: 26
effective length of database: 120,643
effective search space:  3136718
effective search space used:  3136718
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)