GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003790-TA|BGIBMGA003790-PA|undefined
         (90 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   0.45 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   2.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   9.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 0.45
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 61  ESDNFNLLQRLGAIMRVNRLD 81
           +S+  N + R+  + RVNR+D
Sbjct: 365 QSNKMNRMHRMNRVNRVNRMD 385


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 37  PPPRPHVAMKLKKCQRELDRKAKI 60
           PPP P  A K +     +DR +++
Sbjct: 384 PPPGPTPAQKARMRALNIDRVSRV 407


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)

Query: 13 WEDRRFKDHRLK 24
          W ++R+ D++LK
Sbjct: 85 WVEQRWNDYKLK 96


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,006
Number of Sequences: 429
Number of extensions: 1234
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 90
length of database: 140,377
effective HSP length: 48
effective length of query: 42
effective length of database: 119,785
effective search space:  5030970
effective search space used:  5030970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)