GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003787-TA|BGIBMGA003787-PA|IPR003653|Peptidase C48,
SUMO/Sentrin/Ubl1
         (694 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    28   0.30 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   8.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 584 WCLSIVDFGAKKVSYLDSMGGRNQACLDALLQYLRDEHKDKKGQPFDDSGWKTECLSKDI 643
           W  ++  +G  ++  L+ + G  +     ++Q  ++E+K  K    D+S  KTE  + +I
Sbjct: 233 WLFNLTKYGKNQIKLLEIIHGLTKK----VIQLKKEEYKSGKRNIIDNSAQKTESKTNNI 288


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 247 QIPKWMHTGKSTNLSYSKNRLLGLNGARTTLSEVFNLDEKRNYQELI 293
           ++ KW    K +NLS+ K  LL  N    T  E  ++ +  + Q L+
Sbjct: 362 EMNKWWWNMKISNLSFDKQSLLKEN--TVTCQEAMHMLKNADSQLLV 406


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,239
Number of Sequences: 429
Number of extensions: 8645
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 2
length of query: 694
length of database: 140,377
effective HSP length: 62
effective length of query: 632
effective length of database: 113,779
effective search space: 71908328
effective search space used: 71908328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)