GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003786-TA|BGIBMGA003786-PA|IPR001452|Src homology-3,
IPR000584|Dihydropyridine sensitive L-type calcium channel, beta
subunit
         (310 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 16  SQPSSELSLDDDKEALRREKEAQALSQLDK 45
           +Q S EL L  D+E L+ +K  +++ +LD+
Sbjct: 357 TQQSVELKLALDQEQLKSKKLEESMRKLDE 386


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 17  QPSSELSLDDDKEALRREKEAQALSQLDKARSKPVAFAVRT 57
           QPS     + +K+ L+R K   +L  L  AR+  V  A  T
Sbjct: 539 QPSKRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASST 579


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 86  IKEKYDNNW 94
           IK+KY NNW
Sbjct: 163 IKDKYPNNW 171


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,921
Number of Sequences: 429
Number of extensions: 2232
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 310
length of database: 140,377
effective HSP length: 58
effective length of query: 252
effective length of database: 115,495
effective search space: 29104740
effective search space used: 29104740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)