GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003785-TA|BGIBMGA003785-PA|undefined
         (149 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   4.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.1  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 71  DYLFYLAIGNARIKEYNKALHYVKSFLEIE 100
           +Y  Y    N     YNK L+Y    + IE
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIINIE 355


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
          RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 20 VFHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRK 53
          V H++    N++H  +  Y W  +   + +D R+
Sbjct: 23 VNHQRKSANNLAHSMKVIYEWKHIDFDFGSDERR 56


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase
          protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/20 (35%), Positives = 16/20 (80%)

Query: 1  MEDVLDEIVSSEDLQKFERV 20
          +ED +  ++SSE+L+ F+++
Sbjct: 64 VEDFVRLLMSSEELRLFDKI 83


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,511
Number of Sequences: 429
Number of extensions: 1357
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 149
length of database: 140,377
effective HSP length: 53
effective length of query: 96
effective length of database: 117,640
effective search space: 11293440
effective search space used: 11293440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)