GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003777-TA|BGIBMGA003777-PA|IPR006670|Cyclin,
IPR006671|Cyclin, N-terminal, IPR004367|Cyclin, C-terminal,
IPR011028|Cyclin-like
         (511 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    27   0.49 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   6.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   8.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   8.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   8.0  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 26.6 bits (56), Expect = 0.49
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 165 LSNGSVKSARSDVSGEPSLYMTALENISPSEVT 197
           L  G + S    V G PS+Y+T  +NI P+ ++
Sbjct: 27  LKKGPLDSNVEVVVGVPSIYLTYAKNILPNNIS 59


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 306 LAVKLVDLFLTRSTKNEQIEQLTKEELQLLGASALFIASKFDERIPPLVDDFLYIC 361
           L +  + L L    + E I +  K + ++L    L +++++D+R+ P V D  + C
Sbjct: 36  LCILTLALTLVTLVRAEDIFEDGKSDKEIL--DNLLLSTRYDKRLLPPVQDADFCC 89


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 195 EVTKEEYKQISEKLNKVNLDDTSRSLDEETETPHKTPSGVLDFD-FENWNDPLQVSHYAM 253
           EV   EY  I  +L+    DD     +EE E   K     LD D  +    P+Q+    +
Sbjct: 295 EVEDMEYDDIKTELSTGMNDDIPPETEEEEENDKK-----LDLDSIDMMQLPIQLDD-GI 348

Query: 254 DIFNYLK-NRERLFPIDD 270
           DI + +K   ER+  I D
Sbjct: 349 DILDDVKCEDERVISIPD 366


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 169 SVKSARSDVSGEPSLYMTALENISPSEVTKEEYKQISEKLNKVNLDDT 216
           SV+  R  ++ E  + +      S     +EE K +  K+NK+   DT
Sbjct: 136 SVEVKRDIINPEDVILIRRTGEGSKPIFEREEIKNVLTKINKIEEHDT 183


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 100 KSIKSQTSTLNGKTSKTKQLQRVANNAI 127
           K I ++ S +    + T    R+ANN I
Sbjct: 558 KGINAEPSNIEESNNMTDSFTRIANNTI 585


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 178 SGEPSLYMTALENISPSEVTKEEYKQISEKLNKVNLDDTSRSLDEETETPHKTPSGVLDF 237
           +G+P+LY   L  +  S++T    + IS +   +N+  T   +     T  K  SGV   
Sbjct: 11  TGQPNLYKQDLSKLDVSKLTALSREVISRQAT-INI-GTIGHVAHGKSTIVKAISGVQTV 68

Query: 238 DFEN 241
            F+N
Sbjct: 69  RFKN 72


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,726
Number of Sequences: 429
Number of extensions: 5693
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 7
length of query: 511
length of database: 140,377
effective HSP length: 61
effective length of query: 450
effective length of database: 114,208
effective search space: 51393600
effective search space used: 51393600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)