GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003775-TA|BGIBMGA003775-PA|undefined
         (491 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   7.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 128 CVVWIFSSMPIVFTP 142
           CV+WIFS+   + TP
Sbjct: 77  CVIWIFSTSKSLRTP 91


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 128 CVVWIFSSMPIVFTP 142
           CV+WIFS+   + TP
Sbjct: 77  CVIWIFSTSKSLRTP 91


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 396 SESLRHFTTKATCLNDTDLVLPK 418
           SESL+HFT +++      +V P+
Sbjct: 260 SESLKHFTIQSSVTTSKMMVSPR 282


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein
          protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 35 LQVLYKDKHLFLWV 48
          L +LY+D H+ +W+
Sbjct: 51 LHLLYQDVHVMIWI 64


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,932
Number of Sequences: 429
Number of extensions: 6931
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 491
length of database: 140,377
effective HSP length: 60
effective length of query: 431
effective length of database: 114,637
effective search space: 49408547
effective search space used: 49408547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)