GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003774-TA|BGIBMGA003774-PA|undefined
         (214 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.2  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 6  FFMVLSDCQNPWISKLLPTRQAQN 29
          FF++LS C  P     +P+ Q  N
Sbjct: 9  FFLLLSSCTRPSRGNAVPSSQRGN 32


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 6  FFMVLSDCQNPWISKLLPTRQAQN 29
          FF++LS C  P     +P+ Q  N
Sbjct: 9  FFLLLSSCTRPSRGNAVPSSQRGN 32


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,277
Number of Sequences: 429
Number of extensions: 1708
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 214
length of database: 140,377
effective HSP length: 55
effective length of query: 159
effective length of database: 116,782
effective search space: 18568338
effective search space used: 18568338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)