GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003772-TA|BGIBMGA003772-PA|undefined
         (250 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.66 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.1  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 3/19 (15%)

Query: 179 NPKHDLKIYNAACSRIENT 197
           NP H   +Y A C RIENT
Sbjct: 471 NPSH---MYRAVCGRIENT 486


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/57 (24%), Positives = 22/57 (38%)

Query: 120 HQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINN 176
           H   T   V +  +     TP+   I+M    +P+TS            +E D IN+
Sbjct: 822 HCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVIND 878


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 7   LSNGKRITKIEDIIDMQKGEGHF 29
           ++ GK + ++E+IID++    +F
Sbjct: 391 ITKGKPLIRVENIIDLEGAPQNF 413


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 125 SSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINNP-FNP 180
           +++++    I+++  P+   I  ++  + +  W+     N    L+ND+  +P  NP
Sbjct: 38  NTLISNGDYIEENNMPNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNP 94


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,263
Number of Sequences: 429
Number of extensions: 2835
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 4
length of query: 250
length of database: 140,377
effective HSP length: 56
effective length of query: 194
effective length of database: 116,353
effective search space: 22572482
effective search space used: 22572482
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)