GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003768-TA|BGIBMGA003768-PA|IPR011046|WD40-like
         (799 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   4.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 600 ASHRYELGIKQAIIDADNKFVVHIGRN 626
           A   Y++G  QA ID +  FV H G N
Sbjct: 787 AKQIYKVGNVQAYIDGNVVFVCHNGMN 813


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 90  SILAELRDSDVNRYKGICMMESDLVAGFSGFPNYVVSVWSWRTNQ 134
           +++A+  D+DVN+   I    + L      F    V V SW T+Q
Sbjct: 99  AVVAQYYDTDVNKEYAIRGNSAILKCVVPSFVADFVKVLSWHTDQ 143


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 750 FAVLPTQRDNWPELQRLEALYTIEAENESDVFRPWVEEMPEQNSKSLAEV 799
           F  L ++ ++W     +   YT+  EN     R +V    E++S+S+AEV
Sbjct: 265 FHSLASRVESWVNTSVIRN-YTLFNENSEAAARSFVPFSIERSSQSVAEV 313


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 320 LVAFKQRDISKIQLIAPDSRYLATMN 345
           ++A+K + + K   I+PDSR+L T++
Sbjct: 735 VLAYKPKILGK-PTISPDSRHLVTLD 759


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,783
Number of Sequences: 429
Number of extensions: 10385
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 5
length of query: 799
length of database: 140,377
effective HSP length: 63
effective length of query: 736
effective length of database: 113,350
effective search space: 83425600
effective search space used: 83425600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)