GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003767-TA|BGIBMGA003767-PA|IPR007134|Autophagocytosis
associated protein, N-terminal, IPR007135|Autophagocytosis associated
protein, C-terminal
         (323 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    30   0.024
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.89 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.3  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   8.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   8.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 30.3 bits (65), Expect = 0.024
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 228 YDENRSLLTVEQ---MYEDVSQDHAKKTVTMESHPHLSGPSMASVHPCRHADVMKK 280
           Y  NRSL   EQ   MY ++  +H K+    + HP L+   +A     + A + +K
Sbjct: 131 YPTNRSLFIREQTEEMYREMLLEHKKRRARRDIHPELNTQGIALADLTQRAQIGQK 186


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 59  EEAKIRPYLPADKQFLITRNVPCYRRCKQIEYCEDKEKVIEDENDADGGWVDTHHYD 115
           E A IR  L  ++  L T  +  Y + +  +    K+ +I D+ND D        Y+
Sbjct: 156 ENAHIRRTLHMNRTSLKTSKIVSYPKSRSRKKGGLKDNLIPDKNDPDSKECSNQEYE 212


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 40  VAAGDHLVHHCPTWQWAKGE 59
           +  G  L+   P W WAK +
Sbjct: 98  IGNGGPLLEPYPNWSWAKNQ 117


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 200 DEIVRTRTYDLHITYDKYYQTPRL 223
           DE   T   ++HIT D+Y +  RL
Sbjct: 33  DENCETLQSEVHITKDEYDEIGRL 56


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 200 DEIVRTRTYDLHITYDKYYQTPRL 223
           DE   T   ++HIT D+Y +  RL
Sbjct: 33  DENCETLQSEVHITKDEYDEIGRL 56


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,521
Number of Sequences: 429
Number of extensions: 3340
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 6
length of query: 323
length of database: 140,377
effective HSP length: 58
effective length of query: 265
effective length of database: 115,495
effective search space: 30606175
effective search space used: 30606175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)