GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003765-TA|BGIBMGA003765-PA|undefined
         (70 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   0.35 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   7.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   7.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   7.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 0.35
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 27  SGVFGRARERSGVFGSGRGPSVRI 50
           SG+F RARE + V   G    + I
Sbjct: 158 SGIFSRAREEANVVPEGARVPIEI 181


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 7.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 14  HDDICHVRNVRLRSGVFGRARERS 37
           HD   H +   L + + GRA E +
Sbjct: 356 HDPKAHSKGGTLENTINGRADEEA 379


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 7.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 14  HDDICHVRNVRLRSGVFGRARERS 37
           HD   H +   L + + GRA E +
Sbjct: 356 HDPKAHSKGGTLENTINGRADEEA 379


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 18.6 bits (36), Expect = 7.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 14  HDDICHVRNVRLRSGVFGRARERS 37
           HD   H +   L + + GRA E +
Sbjct: 294 HDPKAHSKGGTLENTINGRADEEA 317


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807
Number of Sequences: 429
Number of extensions: 474
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 140,377
effective HSP length: 45
effective length of query: 25
effective length of database: 121,072
effective search space:  3026800
effective search space used:  3026800
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)