GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003759-TA|BGIBMGA003759-PA|IPR006645|NGN, IPR006646|KOW
(Kyrpides, Ouzounis, Woese) motif, IPR003257|Bacterial NusG ribosomal
protein, IPR008991|Translation protein SH3-like, IPR001604|DNA/RNA
non-specific endonuclease, IPR005100|Supt5 repeat, IPR005824|KOW
         (1021 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

 ***** No hits found ******

  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,917
Number of Sequences: 429
Number of extensions: 9790
Number of successful extensions: 23
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 0
length of query: 1021
length of database: 140,377
effective HSP length: 65
effective length of query: 956
effective length of database: 112,492
effective search space: 107542352
effective search space used: 107542352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)