GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003757-TA|BGIBMGA003757-PA|IPR002034|Alpha-
isopropylmalate/homocitrate synthase
         (78 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               24   0.19 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    20   4.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    20   4.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   9.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   9.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   9.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   9.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   9.4  

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 24.2 bits (50), Expect = 0.19
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 38 YGFLPSLLRSPYFNDPPHNYQREAPETLVCS 68
          Y FL  +L + YF  P      +APET +C+
Sbjct: 9  YLFLSVILITSYFVTPVMPCNCKAPETALCA 39


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 22 GGCAQGNAFPLCSSNSYGFLPSLLRSP 48
          G C     F  C      F P+++  P
Sbjct: 35 GKCPSNEIFSRCDGRCQRFCPNVVPKP 61


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 22 GGCAQGNAFPLCSSNSYGFLPSLLRSP 48
          G C     F  C      F P+++  P
Sbjct: 35 GKCPSNEIFSRCDGRCQRFCPNVVPKP 61


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 36  NSYGFLPSLLRSPYFND 52
           N +    SL +SPYF +
Sbjct: 461 NMFKKFASLKKSPYFKE 477


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 8   NVRNFSLQEHCHDDGGCAQGNAFPLCSSNSYGFLPSL 44
           NV+     + CH   G   G   P+    + G L +L
Sbjct: 137 NVQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNL 173


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 8   NVRNFSLQEHCHDDGGCAQGNAFPLCSSNSYGFLPSL 44
           NV+     + CH   G   G   P+    + G L +L
Sbjct: 137 NVQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNL 173


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 8   NVRNFSLQEHCHDDGGCAQGNAFPLCSSNSYGFLPSL 44
           NV+     + CH   G   G   P+    + G L +L
Sbjct: 137 NVQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNL 173


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 36  NSYGFLPSLLRSPYFND 52
           N +    SL +SPYF +
Sbjct: 461 NMFKKFASLKKSPYFKE 477


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,402
Number of Sequences: 429
Number of extensions: 1416
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 78
length of database: 140,377
effective HSP length: 47
effective length of query: 31
effective length of database: 120,214
effective search space:  3726634
effective search space used:  3726634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)