GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003756-TA|BGIBMGA003756-PA|undefined
         (58 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   1.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   2.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   2.7  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    19   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   6.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    18   8.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 2   VCAQSDHWPRASRRGCTLRACVIGADNGVLSLYGAGVLMYLA 43
           VC  + H      R C   A V+   +G+L L   G++MY++
Sbjct: 163 VCYFTAHVTHPRHRLCVFVAGVVFIVSGLLML--VGMVMYIS 202



 Score = 18.2 bits (35), Expect = 8.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 31  LSLYGAGVLMYLAGLIRL 48
           L ++ AGV+  ++GL+ L
Sbjct: 177 LCVFVAGVVFIVSGLLML 194



 Score = 18.2 bits (35), Expect = 8.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 34  YGAGVLMYLAGLI 46
           YG   L+Y++G I
Sbjct: 227 YGFSFLLYVSGFI 239


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 9   WPRASRRGC 17
           WP   +RGC
Sbjct: 493 WPHEDKRGC 501


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 9   WPRASRRGC 17
           WP   +RGC
Sbjct: 583 WPHEDKRGC 591


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP
          synthase 16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 29 GVLSLYGAGVLMYLAG 44
          G++++YG  V + +AG
Sbjct: 62 GIIAIYGLVVAVLIAG 77



 Score = 18.2 bits (35), Expect = 8.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 30  VLSLYGAGVLMYL 42
           VL LYG  V +YL
Sbjct: 141 VLGLYGLIVAIYL 153


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 2   VCAQSDHWPRASRR 15
           + A  D WPR  R+
Sbjct: 400 ITAAVDEWPRLLRK 413


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 2   VCAQSDHWPRASRR 15
           + A  D WPR  R+
Sbjct: 453 ITAAVDEWPRLLRK 466


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 5/10 (50%), Positives = 8/10 (80%)

Query: 19 LRACVIGADN 28
          LR C++G+ N
Sbjct: 5  LRICIVGSGN 14


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,566
Number of Sequences: 429
Number of extensions: 348
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 58
length of database: 140,377
effective HSP length: 38
effective length of query: 20
effective length of database: 124,075
effective search space:  2481500
effective search space used:  2481500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)